J3_6PCR_008

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PCR_008 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0687

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6PCR|1|I|C|2091
6PCR|1|I|U|2092
6PCR|1|I|G|2093
*
6PCR|1|I|C|2196
6PCR|1|I|U|2197
6PCR|1|I|A|2198
6PCR|1|I|A|2199
6PCR|1|I|C|2200
*
6PCR|1|I|G|2223
6PCR|1|I|G|2224
6PCR|1|I|A|2225
6PCR|1|I|C|2226
6PCR|1|I|A|2227
6PCR|1|I|G|2228

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2