J3_6PCR_014

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

6PCR|1|I|A|504, 6PCR|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PCR_014 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1142

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

6PCR|1|I|G|30
6PCR|1|I|C|31
*
6PCR|1|I|G|474
6PCR|1|I|C|475
6PCR|1|I|G|476
6PCR|1|I|A|477
6PCR|1|I|A|478
6PCR|1|I|A|479
6PCR|1|I|A|480
6PCR|1|I|G|481
6PCR|1|I|A|482
6PCR|1|I|A|483
6PCR|1|I|C|484
*
6PCR|1|I|G|496
6PCR|1|I|A|497
6PCR|1|I|G|498
6PCR|1|I|U|499
6PCR|1|I|G|500
6PCR|1|I|A|501
6PCR|1|I|A|502
6PCR|1|I|A|503
6PCR|1|I|A|504
6PCR|1|I|A|505
6PCR|1|I|G|506
6PCR|1|I|A|507
6PCR|1|I|A|508
6PCR|1|I|C|509
6PCR|1|I|C|510

Current chains

Chain I

23S ribosomal RNA

Nearby chains