J3_6PCR_015

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

6PCR|1|I|U|34, 6PCR|1|I|U|448, 6PCR|1|I|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PCR_015 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0717

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

6PCR|1|I|C|32
6PCR|1|I|C|33
6PCR|1|I|U|34
6PCR|1|I|G|35
*
6PCR|1|I|C|445
6PCR|1|I|G|446
6PCR|1|I|A|447
6PCR|1|I|U|448
6PCR|1|I|A|449
6PCR|1|I|G|450
6PCR|1|I|U|451
6PCR|1|I|G|452
6PCR|1|I|A|453
6PCR|1|I|A|454
6PCR|1|I|C|455
6PCR|1|I|C|456
6PCR|1|I|A|457
6PCR|1|I|G|458
6PCR|1|I|U|459
6PCR|1|I|A|460
6PCR|1|I|C|461
*
6PCR|1|I|G|468
6PCR|1|I|G|469
6PCR|1|I|A|470
6PCR|1|I|A|471
6PCR|1|I|A|472
6PCR|1|I|G|473

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4