J3_6PCS_015

3D structure

PDB id

6PCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40e

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

6PCS|1|I|U|34, 6PCS|1|I|U|448, 6PCS|1|I|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PCS_015 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0823

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

6PCS|1|I|C|32
6PCS|1|I|C|33
6PCS|1|I|U|34
6PCS|1|I|G|35
*
6PCS|1|I|C|445
6PCS|1|I|G|446
6PCS|1|I|A|447
6PCS|1|I|U|448
6PCS|1|I|A|449
6PCS|1|I|G|450
6PCS|1|I|U|451
6PCS|1|I|G|452
6PCS|1|I|A|453
6PCS|1|I|A|454
6PCS|1|I|C|455
6PCS|1|I|C|456
6PCS|1|I|A|457
6PCS|1|I|G|458
6PCS|1|I|U|459
6PCS|1|I|A|460
6PCS|1|I|C|461
*
6PCS|1|I|G|468
6PCS|1|I|G|469
6PCS|1|I|A|470
6PCS|1|I|A|471
6PCS|1|I|A|472
6PCS|1|I|G|473

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4