J3_6PCT_015

3D structure

PDB id

6PCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 41q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

6PCT|1|I|U|34, 6PCT|1|I|U|448, 6PCT|1|I|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PCT_015 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0793

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

6PCT|1|I|C|32
6PCT|1|I|C|33
6PCT|1|I|U|34
6PCT|1|I|G|35
*
6PCT|1|I|C|445
6PCT|1|I|G|446
6PCT|1|I|A|447
6PCT|1|I|U|448
6PCT|1|I|A|449
6PCT|1|I|G|450
6PCT|1|I|U|451
6PCT|1|I|G|452
6PCT|1|I|A|453
6PCT|1|I|A|454
6PCT|1|I|C|455
6PCT|1|I|C|456
6PCT|1|I|A|457
6PCT|1|I|G|458
6PCT|1|I|U|459
6PCT|1|I|A|460
6PCT|1|I|C|461
*
6PCT|1|I|G|468
6PCT|1|I|G|469
6PCT|1|I|A|470
6PCT|1|I|A|471
6PCT|1|I|A|472
6PCT|1|I|G|473

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4