3D structure

PDB id
6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
High resolution cryo-EM structure of E.coli 50S
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
Length
28 nucleotides
Bulged bases
6PJ6|1|I|A|504, 6PJ6|1|I|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6PJ6_016 not in the Motif Atlas
Homologous match to J3_5J7L_066
Geometric discrepancy: 0.0868
The information below is about J3_5J7L_066
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

6PJ6|1|I|G|30
6PJ6|1|I|C|31
*
6PJ6|1|I|G|474
6PJ6|1|I|C|475
6PJ6|1|I|G|476
6PJ6|1|I|A|477
6PJ6|1|I|A|478
6PJ6|1|I|A|479
6PJ6|1|I|A|480
6PJ6|1|I|G|481
6PJ6|1|I|A|482
6PJ6|1|I|A|483
6PJ6|1|I|C|484
*
6PJ6|1|I|G|496
6PJ6|1|I|A|497
6PJ6|1|I|G|498
6PJ6|1|I|U|499
6PJ6|1|I|G|500
6PJ6|1|I|A|501
6PJ6|1|I|A|502
6PJ6|1|I|A|503
6PJ6|1|I|A|504
6PJ6|1|I|A|505
6PJ6|1|I|G|506
6PJ6|1|I|A|507
6PJ6|1|I|A|508
6PJ6|1|I|C|509
6PJ6|1|I|C|510

Current chains

Chain I
23S rRNA

Nearby chains

Chain Y
50S ribosomal protein L20
Chain a
50S ribosomal protein L22
Chain c
50S ribosomal protein L24

Coloring options:


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