J3_6PJ6_017
3D structure
- PDB id
- 6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cryo-EM structure of E.coli 50S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6PJ6|1|I|U|34, 6PJ6|1|I|U|448, 6PJ6|1|I|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6PJ6_017 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.0668
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
6PJ6|1|I|C|32
6PJ6|1|I|C|33
6PJ6|1|I|U|34
6PJ6|1|I|G|35
*
6PJ6|1|I|C|445
6PJ6|1|I|G|446
6PJ6|1|I|A|447
6PJ6|1|I|U|448
6PJ6|1|I|A|449
6PJ6|1|I|G|450
6PJ6|1|I|U|451
6PJ6|1|I|G|452
6PJ6|1|I|A|453
6PJ6|1|I|A|454
6PJ6|1|I|C|455
6PJ6|1|I|C|456
6PJ6|1|I|A|457
6PJ6|1|I|G|458
6PJ6|1|I|U|459
6PJ6|1|I|A|460
6PJ6|1|I|C|461
*
6PJ6|1|I|G|468
6PJ6|1|I|G|469
6PJ6|1|I|A|470
6PJ6|1|I|A|471
6PJ6|1|I|A|472
6PJ6|1|I|G|473
Current chains
- Chain I
- 23S rRNA
Nearby chains
- Chain M
- 50S ribosomal protein L4
- Chain Y
- 50S ribosomal protein L20
- Chain b
- 50S ribosomal protein L23
- Chain k
- 50S ribosomal protein L34
Coloring options: