J3_6PPF_008

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

6PPF|1|A|A|1654, 6PPF|1|A|A|1655

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PPF_008 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.1987

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

6PPF|1|A|C|1344
6PPF|1|A|U|1345
6PPF|1|A|A|1346
6PPF|1|A|A|1347
6PPF|1|A|G|1348
*
6PPF|1|A|C|1650
6PPF|1|A|G|1651
6PPF|1|A|C|1652
6PPF|1|A|A|1653
6PPF|1|A|A|1654
6PPF|1|A|A|1655
6PPF|1|A|C|1656
*
6PPF|1|A|G|1665
6PPF|1|A|U|1666
6PPF|1|A|A|1667
6PPF|1|A|G|1668

Current chains

Chain A

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L34