J3_6PPF_012

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAU*AGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PPF_012 not in the Motif Atlas

Homologous match to J3_7RQB_013

Geometric discrepancy: 0.1775

The information below is about J3_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24416.1

Basepair signature

cWW-F-F-tWH-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

6PPF|1|A|C|2818
6PPF|1|A|A|2819
6PPF|1|A|U|2820
*
6PPF|1|A|A|2831
6PPF|1|A|G|2832
6PPF|1|A|U|2833
6PPF|1|A|A|2834
6PPF|1|A|A|2835
6PPF|1|A|G|2836
*
6PPF|1|A|C|2914
6PPF|1|A|G|2915
6PPF|1|A|A|2916
6PPF|1|A|G|2917
6PPF|1|A|G|2918

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain S

50S ribosomal protein L22