J3_6PPF_015
3D structure
- PDB id
- 6PPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bacterial 45SRbgA ribosomal particle class B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6PPF|1|A|U|495, 6PPF|1|A|C|503
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6PPF_015 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.1351
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.2
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
6PPF|1|A|C|32
6PPF|1|A|U|33
6PPF|1|A|U|34
6PPF|1|A|G|35
*
6PPF|1|A|C|492
6PPF|1|A|G|493
6PPF|1|A|A|494
6PPF|1|A|U|495
6PPF|1|A|A|496
6PPF|1|A|G|497
6PPF|1|A|U|498
6PPF|1|A|G|499
6PPF|1|A|A|500
6PPF|1|A|A|501
6PPF|1|A|C|502
6PPF|1|A|C|503
6PPF|1|A|A|504
6PPF|1|A|G|505
6PPF|1|A|U|506
6PPF|1|A|A|507
6PPF|1|A|C|508
*
6PPF|1|A|G|515
6PPF|1|A|G|516
6PPF|1|A|A|517
6PPF|1|A|A|518
6PPF|1|A|A|519
6PPF|1|A|G|520
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain E
- 50S ribosomal protein L4
- Chain Q
- 50S ribosomal protein L20
- Chain T
- 50S ribosomal protein L23
- Chain d
- 50S ribosomal protein L34
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