J3_6PRV_001

3D structure

PDB id

6PRV (explore in PDB, NAKB, or RNA 3D Hub)

Description

58nt RNA L11-binding domain from E. coli 23S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.71 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

6PRV|1|A|G|1055
6PRV|1|A|G|1056
6PRV|1|A|A|1057
*
6PRV|1|A|U|1081
6PRV|1|A|U|1082
6PRV|1|A|U|1083
6PRV|1|A|A|1084
6PRV|1|A|A|1085
6PRV|1|A|A|1086
6PRV|1|A|G|1087
*
6PRV|1|A|C|1102
6PRV|1|A|A|1103
6PRV|1|A|C|1104

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large subunit ribosomal RNA; LSU rRNA

Chain D

Large subunit ribosomal RNA; LSU rRNA