J3_6Q8Y_012
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AAC*GGAC*GUUU
- Length
- 11 nucleotides
- Bulged bases
- 6Q8Y|1|2|U|1413, 6Q8Y|1|2|U|1414
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Q8Y_012 not in the Motif Atlas
- Homologous match to J3_4V88_040
- Geometric discrepancy: 0.1098
- The information below is about J3_4V88_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.2
- Basepair signature
- cWW-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6Q8Y|1|2|A|1336
6Q8Y|1|2|A|1337
6Q8Y|1|2|C|1338
*
6Q8Y|1|2|G|1386
6Q8Y|1|2|G|1387
6Q8Y|1|2|A|1388
6Q8Y|1|2|C|1389
*
6Q8Y|1|2|G|1412
6Q8Y|1|2|U|1413
6Q8Y|1|2|U|1414
6Q8Y|1|2|U|1415
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain B
- Rps5p
- Chain F
- 40S ribosomal protein S16-A
- Chain G
- 40S ribosomal protein S17-A
- Chain J
- 40S ribosomal protein S20
- Chain M
- 40S ribosomal protein S29-A
- Chain O
- Guanine nucleotide-binding protein subunit beta-like protein
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