J3_6Q8Y_014
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 6Q8Y|1|BQ|U|117, 6Q8Y|1|BQ|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Q8Y_014 not in the Motif Atlas
- Homologous match to J3_8C3A_001
- Geometric discrepancy: 0.079
- The information below is about J3_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88489.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-tWH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
6Q8Y|1|BQ|C|113
6Q8Y|1|BQ|A|114
6Q8Y|1|BQ|A|115
6Q8Y|1|BQ|A|116
6Q8Y|1|BQ|U|117
6Q8Y|1|BQ|U|118
6Q8Y|1|BQ|U|119
6Q8Y|1|BQ|G|120
6Q8Y|1|BQ|A|121
6Q8Y|1|BQ|A|122
6Q8Y|1|BQ|A|123
*
6Q8Y|1|BQ|U|149
6Q8Y|1|BQ|A|150
6Q8Y|1|BQ|A|151
6Q8Y|1|BQ|U|152
6Q8Y|1|BQ|U|153
6Q8Y|1|BQ|U|154
6Q8Y|1|BQ|G|155
6Q8Y|1|BQ|G|156
6Q8Y|1|BQ|A|157
6Q8Y|1|BQ|G|158
*
6Q8Y|1|BQ|C|263
6Q8Y|1|BQ|G|264
6Q8Y|1|BQ|A|265
6Q8Y|1|BQ|A|266
6Q8Y|1|BQ|G|267
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AA
- 60S ribosomal protein L8-A
- Chain AC
- 60S ribosomal protein L36-A
- Chain AJ
- 60S ribosomal protein L13-A
- Chain AQ
- 60S ribosomal protein L15-A
- Chain BP
- 60S ribosomal protein L35-A
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