J3_6Q8Y_016
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 6Q8Y|1|BQ|A|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Q8Y_016 not in the Motif Atlas
- Homologous match to J3_5TBW_003
- Geometric discrepancy: 0.0851
- The information below is about J3_5TBW_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_15033.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6Q8Y|1|BQ|U|502
6Q8Y|1|BQ|C|503
*
6Q8Y|1|BQ|G|588
6Q8Y|1|BQ|A|589
6Q8Y|1|BQ|G|590
6Q8Y|1|BQ|G|591
6Q8Y|1|BQ|A|592
6Q8Y|1|BQ|C|593
6Q8Y|1|BQ|U|594
6Q8Y|1|BQ|G|595
6Q8Y|1|BQ|C|596
6Q8Y|1|BQ|G|597
*
6Q8Y|1|BQ|C|606
6Q8Y|1|BQ|A|607
6Q8Y|1|BQ|A|608
6Q8Y|1|BQ|G|609
6Q8Y|1|BQ|G|610
6Q8Y|1|BQ|A|611
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain BE
- 60S ribosomal protein L4-A
- Chain BG
- 60S ribosomal protein L32
- Chain BM
- 60S ribosomal protein L6-A
- Chain BO
- 60S ribosomal protein L7-A
Coloring options: