J3_6Q8Y_020

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

6Q8Y|1|BQ|A|1259

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Q8Y_020 not in the Motif Atlas

Homologous match to J3_8C3A_005

Geometric discrepancy: 0.514

The information below is about J3_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

6Q8Y|1|BQ|G|1230
6Q8Y|1|BQ|A|1231
6Q8Y|1|BQ|C|1232
*
6Q8Y|1|BQ|G|1256
6Q8Y|1|BQ|C|1257
6Q8Y|1|BQ|U|1258
6Q8Y|1|BQ|A|1259
6Q8Y|1|BQ|A|1260
6Q8Y|1|BQ|G|1261
6Q8Y|1|BQ|G|1262
*
6Q8Y|1|BQ|C|1277
6Q8Y|1|BQ|A|1278
6Q8Y|1|BQ|C|1279

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains