J3_6Q8Y_023
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCGAUC*GGAAU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Q8Y_023 not in the Motif Atlas
- Homologous match to J3_5TBW_010
- Geometric discrepancy: 0.08
- The information below is about J3_5TBW_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_70383.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
6Q8Y|1|BQ|U|1526
6Q8Y|1|BQ|C|1527
6Q8Y|1|BQ|G|1528
6Q8Y|1|BQ|A|1529
6Q8Y|1|BQ|U|1530
6Q8Y|1|BQ|C|1531
*
6Q8Y|1|BQ|G|1591
6Q8Y|1|BQ|G|1592
6Q8Y|1|BQ|A|1593
6Q8Y|1|BQ|A|1594
6Q8Y|1|BQ|U|1595
*
6Q8Y|1|BQ|A|1612
6Q8Y|1|BQ|A|1613
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AH
- 60S ribosomal protein L25
- Chain AI
- 60S ribosomal protein L38
- Chain AL
- 60S ribosomal protein L39
- Chain BN
- 60S ribosomal protein L34-A
- Chain BS
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: