J3_6Q8Y_025
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUUG*CUUAUU*AAGACAUU
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Q8Y_025 not in the Motif Atlas
- Homologous match to J3_8C3A_008
- Geometric discrepancy: 0.0821
- The information below is about J3_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_18654.1
- Basepair signature
- cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
6Q8Y|1|BQ|A|2432
6Q8Y|1|BQ|U|2433
6Q8Y|1|BQ|U|2434
6Q8Y|1|BQ|G|2435
*
6Q8Y|1|BQ|C|2512
6Q8Y|1|BQ|U|2513
6Q8Y|1|BQ|U|2514
6Q8Y|1|BQ|A|2515
6Q8Y|1|BQ|U|2516
6Q8Y|1|BQ|U|2517
*
6Q8Y|1|BQ|A|2590
6Q8Y|1|BQ|A|2591
6Q8Y|1|BQ|G|2592
6Q8Y|1|BQ|A|2593
6Q8Y|1|BQ|C|2594
6Q8Y|1|BQ|A|2595
6Q8Y|1|BQ|U|2596
6Q8Y|1|BQ|U|2597
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AA
- 60S ribosomal protein L8-A
- Chain AC
- 60S ribosomal protein L36-A
- Chain AQ
- 60S ribosomal protein L15-A
- Chain AW
- 60S ribosomal protein L2-A
Coloring options: