J3_6Q8Y_041
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGCC
- Length
- 21 nucleotides
- Bulged bases
- 6Q8Y|1|BQ|C|2760, 6Q8Y|1|BQ|C|2797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Q8Y_041 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0599
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6Q8Y|1|BQ|G|2651
6Q8Y|1|BQ|U|2652
6Q8Y|1|BQ|C|2653
*
6Q8Y|1|BQ|G|2754
6Q8Y|1|BQ|C|2755
6Q8Y|1|BQ|C|2756
6Q8Y|1|BQ|U|2757
6Q8Y|1|BQ|A|2758
6Q8Y|1|BQ|U|2759
6Q8Y|1|BQ|C|2760
6Q8Y|1|BQ|G|2761
6Q8Y|1|BQ|A|2762
6Q8Y|1|BQ|U|2763
6Q8Y|1|BQ|C|2764
6Q8Y|1|BQ|C|2765
*
6Q8Y|1|BQ|G|2793
6Q8Y|1|BQ|G|2794
6Q8Y|1|BQ|U|2795
6Q8Y|1|BQ|G|2796
6Q8Y|1|BQ|C|2797
6Q8Y|1|BQ|C|2798
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AP
- 60S ribosomal protein L42-A
- Chain AR
- 60S ribosomal protein L28
- Chain BB
- 60S ribosomal protein L18-A
- Chain BJ
- 60S ribosomal protein L21-A
- Chain m
- Transfer RNA; tRNA
Coloring options: