J3_6Q95_003

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

6Q95|1|1|G|686, 6Q95|1|1|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Q95_003 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.1111

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6Q95|1|1|C|683
6Q95|1|1|G|684
6Q95|1|1|A|685
6Q95|1|1|G|686
6Q95|1|1|C|687
6Q95|1|1|U|688
6Q95|1|1|A|689
*
6Q95|1|1|U|773
6Q95|1|1|A|774
6Q95|1|1|G|775
*
6Q95|1|1|C|791
6Q95|1|1|G|792
6Q95|1|1|A|793
6Q95|1|1|G|794

Current chains

Chain 1

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain d

50S ribosomal protein L34