J3_6Q95_006
3D structure
- PDB id
- 6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CAAG*CGCAAAC*GUG
- Length
- 14 nucleotides
- Bulged bases
- 6Q95|1|1|A|1609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Q95_006 not in the Motif Atlas
- Homologous match to J3_7RQB_008
- Geometric discrepancy: 0.1069
- The information below is about J3_7RQB_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_16623.1
- Basepair signature
- cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6Q95|1|1|C|1306
6Q95|1|1|A|1307
6Q95|1|1|A|1308
6Q95|1|1|G|1309
*
6Q95|1|1|C|1605
6Q95|1|1|G|1606
6Q95|1|1|C|1607
6Q95|1|1|A|1608
6Q95|1|1|A|1609
6Q95|1|1|A|1610
6Q95|1|1|C|1611
*
6Q95|1|1|G|1620
6Q95|1|1|U|1621
6Q95|1|1|G|1622
Current chains
- Chain 1
- 23S RIBOSOMAL RNA
Nearby chains
- Chain d
- 50S ribosomal protein L34
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