J3_6Q95_009
3D structure
- PDB id
- 6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GCC*GCCUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 6Q95|1|1|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Q95_009 not in the Motif Atlas
- Homologous match to J3_9DFE_015
- Geometric discrepancy: 0.1024
- The information below is about J3_9DFE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6Q95|1|1|G|2282
6Q95|1|1|C|2283
6Q95|1|1|C|2284
*
6Q95|1|1|G|2384
6Q95|1|1|C|2385
6Q95|1|1|C|2386
6Q95|1|1|U|2387
6Q95|1|1|A|2388
6Q95|1|1|G|2389
6Q95|1|1|U|2390
6Q95|1|1|G|2391
6Q95|1|1|A|2392
6Q95|1|1|A|2393
6Q95|1|1|C|2394
6Q95|1|1|C|2395
*
6Q95|1|1|G|2421
6Q95|1|1|A|2422
6Q95|1|1|U|2423
6Q95|1|1|C|2424
6Q95|1|1|A|2425
6Q95|1|1|A|2426
6Q95|1|1|C|2427
Current chains
- Chain 1
- 23S RIBOSOMAL RNA
Nearby chains
- Chain 8
- Transfer RNA; tRNA
- Chain L
- 50S ribosomal protein L15
- Chain W
- 50S ribosomal protein L27
- Chain X
- 50S ribosomal protein L28
- Chain c
- 50S ribosomal protein L33
- Chain e
- 50S ribosomal protein L35
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