3D structure

PDB id
6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CAAG*CUAGUAA*UGAAUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6Q95_017 not in the Motif Atlas
Homologous match to J3_4LFB_002
Geometric discrepancy: 0.1247
The information below is about J3_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.4
Basepair signature
cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
Number of instances in this motif group
4

Unit IDs

6Q95|1|2|C|936
6Q95|1|2|A|937
6Q95|1|2|A|938
6Q95|1|2|G|939
*
6Q95|1|2|C|1344
6Q95|1|2|U|1345
6Q95|1|2|A|1346
6Q95|1|2|G|1347
6Q95|1|2|U|1348
6Q95|1|2|A|1349
6Q95|1|2|A|1350
*
6Q95|1|2|U|1372
6Q95|1|2|G|1373
6Q95|1|2|A|1374
6Q95|1|2|A|1375
6Q95|1|2|U|1376
6Q95|1|2|A|1377
6Q95|1|2|C|1378
6Q95|1|2|G|1379

Current chains

Chain 2
16S RIBOSOMAL RNA

Nearby chains

Chain 8
Transfer RNA; tRNA
Chain l
30S ribosomal protein S7
Chain n
30S ribosomal protein S9

Coloring options:


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