J3_6Q95_022

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Q95_022 not in the Motif Atlas

Homologous match to J3_6CZR_024

Geometric discrepancy: 0.1751

The information below is about J3_6CZR_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04260.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6Q95|1|2|U|1073
6Q95|1|2|G|1074
*
6Q95|1|2|U|1083
6Q95|1|2|G|1084
6Q95|1|2|U|1085
6Q95|1|2|U|1086
6Q95|1|2|G|1087
*
6Q95|1|2|C|1098
6Q95|1|2|G|1099
6Q95|1|2|C|1100
6Q95|1|2|A|1101
6Q95|1|2|A|1102

Current chains

Chain 2

16S RIBOSOMAL RNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain j

30S ribosomal protein S5