J3_6Q95_036
3D structure
- PDB id
- 6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAAACGGUCUCGAC*GGACG*CC
- Length
- 21 nucleotides
- Bulged bases
- 6Q95|1|4|A|8, 6Q95|1|4|A|9, 6Q95|1|4|A|10, 6Q95|1|4|C|11, 6Q95|1|4|C|15, 6Q95|1|4|U|16, 6Q95|1|4|C|17, 6Q95|1|4|C|321
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q95|1|4|G|7
6Q95|1|4|A|8
6Q95|1|4|A|9
6Q95|1|4|A|10
6Q95|1|4|C|11
6Q95|1|4|G|12
6Q95|1|4|G|13
6Q95|1|4|U|14
6Q95|1|4|C|15
6Q95|1|4|U|16
6Q95|1|4|C|17
6Q95|1|4|G|18
6Q95|1|4|A|19
6Q95|1|4|C|20
*
6Q95|1|4|G|318
6Q95|1|4|G|319
6Q95|1|4|A|320
6Q95|1|4|C|321
6Q95|1|4|G|322
*
6Q95|1|4|C|338
6Q95|1|4|C|339
Current chains
- Chain 4
- transfer-messenger RNA (tmRNA)
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 5
- SsrA-binding protein
- Chain 7
- Transfer RNA; tRNA
Coloring options: