J3_6Q97_004

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAGG*CCGAAC*GAUG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Q97_004 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.5328

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6Q97|1|1|C|698
6Q97|1|1|A|699
6Q97|1|1|G|700
6Q97|1|1|G|701
*
6Q97|1|1|C|731
6Q97|1|1|C|732
6Q97|1|1|G|733
6Q97|1|1|A|734
6Q97|1|1|A|735
6Q97|1|1|C|736
*
6Q97|1|1|G|760
6Q97|1|1|A|761
6Q97|1|1|U|762
6Q97|1|1|G|763

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2