J3_6Q97_010

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACAUC*GUAUG*CAUUUAAAGU

Length

20 nucleotides

Bulged bases

6Q97|1|1|A|2518, 6Q97|1|1|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|1|A|2516
6Q97|1|1|C|2517
6Q97|1|1|A|2518
6Q97|1|1|U|2519
6Q97|1|1|C|2520
*
6Q97|1|1|G|2545
6Q97|1|1|U|2546
6Q97|1|1|A|2547
6Q97|1|1|U|2548
6Q97|1|1|G|2549
*
6Q97|1|1|C|2559
6Q97|1|1|A|2560
6Q97|1|1|U|2561
6Q97|1|1|U|2562
6Q97|1|1|U|2563
6Q97|1|1|A|2564
6Q97|1|1|A|2565
6Q97|1|1|A|2566
6Q97|1|1|G|2567
6Q97|1|1|U|2568

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain K

50S ribosomal protein L14