J3_6Q97_013
3D structure
- PDB id
- 6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGUA*UACCGGUGG*CGGCC
- Length
- 18 nucleotides
- Bulged bases
- 6Q97|1|2|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Q97_013 not in the Motif Atlas
- Geometric match to J3_4V88_033
- Geometric discrepancy: 0.2725
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6Q97|1|2|G|670
6Q97|1|2|G|671
6Q97|1|2|U|672
6Q97|1|2|A|673
*
6Q97|1|2|U|717
6Q97|1|2|A|718
6Q97|1|2|C|719
6Q97|1|2|C|720
6Q97|1|2|G|721
6Q97|1|2|G|722
6Q97|1|2|U|723
6Q97|1|2|G|724
6Q97|1|2|G|725
*
6Q97|1|2|C|732
6Q97|1|2|G|733
6Q97|1|2|G|734
6Q97|1|2|C|735
6Q97|1|2|C|736
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L2
- Chain k
- 30S ribosomal protein S6
- Chain p
- 30S ribosomal protein S11
- Chain t
- 30S ribosomal protein S15
- Chain w
- 30S ribosomal protein S18
- Chain z
- 30S ribosomal protein S21
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