J3_6Q97_025
3D structure
- PDB id
- 6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAAG*CGAAG*CGAGUCUUAACUGGGCGUUAAG
- Length
- 31 nucleotides
- Bulged bases
- 6Q97|1|1|U|646, 6Q97|1|1|A|654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q97|1|1|C|601
6Q97|1|1|A|602
6Q97|1|1|A|603
6Q97|1|1|G|604
*
6Q97|1|1|C|624
6Q97|1|1|G|625
6Q97|1|1|A|626
6Q97|1|1|A|627
6Q97|1|1|G|628
*
6Q97|1|1|C|635
6Q97|1|1|G|636
6Q97|1|1|A|637
6Q97|1|1|G|638
6Q97|1|1|U|639
6Q97|1|1|C|640
6Q97|1|1|U|641
6Q97|1|1|U|642
6Q97|1|1|A|643
6Q97|1|1|A|644
6Q97|1|1|C|645
6Q97|1|1|U|646
6Q97|1|1|G|647
6Q97|1|1|G|648
6Q97|1|1|G|649
6Q97|1|1|C|650
6Q97|1|1|G|651
6Q97|1|1|U|652
6Q97|1|1|U|653
6Q97|1|1|A|654
6Q97|1|1|A|655
6Q97|1|1|G|656
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
- Chain c
- 50S ribosomal protein L33
- Chain e
- 50S ribosomal protein L35
Coloring options: