J3_6Q97_026
3D structure
- PDB id
- 6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGAUCUAG*CUGGGGGU*GCCAAUCAAAC
- Length
- 28 nucleotides
- Bulged bases
- 6Q97|1|1|U|686, 6Q97|1|1|A|789, 6Q97|1|1|U|790, 6Q97|1|1|A|792
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q97|1|1|G|682
6Q97|1|1|U|683
6Q97|1|1|G|684
6Q97|1|1|A|685
6Q97|1|1|U|686
6Q97|1|1|C|687
6Q97|1|1|U|688
6Q97|1|1|A|689
6Q97|1|1|G|690
*
6Q97|1|1|C|772
6Q97|1|1|U|773
6Q97|1|1|G|774
6Q97|1|1|G|775
6Q97|1|1|G|776
6Q97|1|1|G|777
6Q97|1|1|G|778
6Q97|1|1|U|779
*
6Q97|1|1|G|785
6Q97|1|1|C|786
6Q97|1|1|C|787
6Q97|1|1|A|788
6Q97|1|1|A|789
6Q97|1|1|U|790
6Q97|1|1|C|791
6Q97|1|1|A|792
6Q97|1|1|A|793
6Q97|1|1|A|794
6Q97|1|1|C|795
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 6
- Nascent peptide
- Chain B
- 50S ribosomal protein L2
- Chain D
- 50S ribosomal protein L4
- Chain S
- 50S ribosomal protein L22
- Chain d
- 50S ribosomal protein L34
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