J3_6Q97_028
3D structure
- PDB id
- 6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CCCAGACAGCCAGGAUG*CAUUUAAAG*CACUGGUCGAG
- Length
- 37 nucleotides
- Bulged bases
- 6Q97|1|1|C|1045, 6Q97|1|1|A|1046, 6Q97|1|1|U|1081, 6Q97|1|1|U|1083
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q97|1|1|C|1043
6Q97|1|1|C|1044
6Q97|1|1|C|1045
6Q97|1|1|A|1046
6Q97|1|1|G|1047
6Q97|1|1|A|1048
6Q97|1|1|C|1049
6Q97|1|1|A|1050
6Q97|1|1|G|1051
6Q97|1|1|C|1052
6Q97|1|1|C|1053
6Q97|1|1|A|1054
6Q97|1|1|G|1055
6Q97|1|1|G|1056
6Q97|1|1|A|1057
6Q97|1|1|U|1058
6Q97|1|1|G|1059
*
6Q97|1|1|C|1079
6Q97|1|1|A|1080
6Q97|1|1|U|1081
6Q97|1|1|U|1082
6Q97|1|1|U|1083
6Q97|1|1|A|1084
6Q97|1|1|A|1085
6Q97|1|1|A|1086
6Q97|1|1|G|1087
*
6Q97|1|1|C|1102
6Q97|1|1|A|1103
6Q97|1|1|C|1104
6Q97|1|1|U|1105
6Q97|1|1|G|1106
6Q97|1|1|G|1107
6Q97|1|1|U|1108
6Q97|1|1|C|1109
6Q97|1|1|G|1110
6Q97|1|1|A|1111
6Q97|1|1|G|1112
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain F
- 50S ribosomal protein L6
- Chain H
- 50S ribosomal protein L10
- Chain I
- 50S ribosomal protein L11
- Chain f
- 50S ribosomal protein L36
Coloring options: