J3_6Q97_033

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGU*GCUUGAG*CUGACG

Length

17 nucleotides

Bulged bases

6Q97|1|2|U|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|2|C|586
6Q97|1|2|G|587
6Q97|1|2|G|588
6Q97|1|2|U|589
*
6Q97|1|2|G|650
6Q97|1|2|C|651
6Q97|1|2|U|652
6Q97|1|2|U|653
6Q97|1|2|G|654
6Q97|1|2|A|655
6Q97|1|2|G|656
*
6Q97|1|2|C|750
6Q97|1|2|U|751
6Q97|1|2|G|752
6Q97|1|2|A|753
6Q97|1|2|C|754
6Q97|1|2|G|755

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S8

Chain q

30S ribosomal protein S12

Chain t

30S ribosomal protein S15

Chain v

30S ribosomal protein S17