J3_6Q97_034

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAGAGGGGGGUA*UACCGGUGG*CGGCCCCCUGGA

Length

33 nucleotides

Bulged bases

6Q97|1|2|U|723

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|2|U|662
6Q97|1|2|A|663
6Q97|1|2|G|664
6Q97|1|2|A|665
6Q97|1|2|G|666
6Q97|1|2|G|667
6Q97|1|2|G|668
6Q97|1|2|G|669
6Q97|1|2|G|670
6Q97|1|2|G|671
6Q97|1|2|U|672
6Q97|1|2|A|673
*
6Q97|1|2|U|717
6Q97|1|2|A|718
6Q97|1|2|C|719
6Q97|1|2|C|720
6Q97|1|2|G|721
6Q97|1|2|G|722
6Q97|1|2|U|723
6Q97|1|2|G|724
6Q97|1|2|G|725
*
6Q97|1|2|C|732
6Q97|1|2|G|733
6Q97|1|2|G|734
6Q97|1|2|C|735
6Q97|1|2|C|736
6Q97|1|2|C|737
6Q97|1|2|C|738
6Q97|1|2|C|739
6Q97|1|2|U|740
6Q97|1|2|G|741
6Q97|1|2|G|742
6Q97|1|2|A|743

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain k

30S ribosomal protein S6

Chain p

30S ribosomal protein S11

Chain t

30S ribosomal protein S15

Chain w

30S ribosomal protein S18

Chain z

30S ribosomal protein S21