J3_6Q97_035

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAG*CUAGUAAUC*GGUGAAUACG

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|2|C|936
6Q97|1|2|A|937
6Q97|1|2|A|938
6Q97|1|2|G|939
*
6Q97|1|2|C|1344
6Q97|1|2|U|1345
6Q97|1|2|A|1346
6Q97|1|2|G|1347
6Q97|1|2|U|1348
6Q97|1|2|A|1349
6Q97|1|2|A|1350
6Q97|1|2|U|1351
6Q97|1|2|C|1352
*
6Q97|1|2|G|1370
6Q97|1|2|G|1371
6Q97|1|2|U|1372
6Q97|1|2|G|1373
6Q97|1|2|A|1374
6Q97|1|2|A|1375
6Q97|1|2|U|1376
6Q97|1|2|A|1377
6Q97|1|2|C|1378
6Q97|1|2|G|1379

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 8

Transfer RNA; tRNA

Chain l

30S ribosomal protein S7

Chain n

30S ribosomal protein S9