J3_6Q97_036

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUGGAGCA*UGCUAC*GGAAUC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|2|G|941
6Q97|1|2|G|942
6Q97|1|2|U|943
6Q97|1|2|G|944
6Q97|1|2|G|945
6Q97|1|2|A|946
6Q97|1|2|G|947
6Q97|1|2|C|948
6Q97|1|2|A|949
*
6Q97|1|2|U|1232
6Q97|1|2|G|1233
6Q97|1|2|C|1234
6Q97|1|2|U|1235
6Q97|1|2|A|1236
6Q97|1|2|C|1237
*
6Q97|1|2|G|1337
6Q97|1|2|G|1338
6Q97|1|2|A|1339
6Q97|1|2|A|1340
6Q97|1|2|U|1341
6Q97|1|2|C|1342

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 7

Transfer RNA; tRNA

Chain 8

Transfer RNA; tRNA

Chain l

30S ribosomal protein S7

Chain n

30S ribosomal protein S9

Chain r

30S ribosomal protein S13