J3_6Q97_039

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAUGG*UCGUAGUCC*GUCG

Length

19 nucleotides

Bulged bases

6Q97|1|2|U|1240, 6Q97|1|2|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|2|C|1237
6Q97|1|2|A|1238
6Q97|1|2|A|1239
6Q97|1|2|U|1240
6Q97|1|2|G|1241
6Q97|1|2|G|1242
*
6Q97|1|2|U|1295
6Q97|1|2|C|1296
6Q97|1|2|G|1297
6Q97|1|2|U|1298
6Q97|1|2|A|1299
6Q97|1|2|G|1300
6Q97|1|2|U|1301
6Q97|1|2|C|1302
6Q97|1|2|C|1303
*
6Q97|1|2|G|1334
6Q97|1|2|U|1335
6Q97|1|2|C|1336
6Q97|1|2|G|1337

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S7

Chain r

30S ribosomal protein S13