J3_6Q97_041
3D structure
- PDB id
- 6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGAUUCUGGAUUCGACGGGA*UUUCGGACG*CCA
- Length
- 32 nucleotides
- Bulged bases
- 6Q97|1|4|U|9, 6Q97|1|4|U|10, 6Q97|1|4|C|11, 6Q97|1|4|U|12, 6Q97|1|4|G|13, 6Q97|1|4|G|14, 6Q97|1|4|U|16, 6Q97|1|4|G|333, 6Q97|1|4|C|335
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q97|1|4|U|6
6Q97|1|4|G|7
6Q97|1|4|A|8
6Q97|1|4|U|9
6Q97|1|4|U|10
6Q97|1|4|C|11
6Q97|1|4|U|12
6Q97|1|4|G|13
6Q97|1|4|G|14
6Q97|1|4|A|15
6Q97|1|4|U|16
6Q97|1|4|U|17
6Q97|1|4|C|18
6Q97|1|4|G|19
6Q97|1|4|A|20
6Q97|1|4|C|21
6Q97|1|4|G|22
6Q97|1|4|G|23
6Q97|1|4|G|24
6Q97|1|4|A|25
*
6Q97|1|4|U|328
6Q97|1|4|U|329
6Q97|1|4|U|330
6Q97|1|4|C|331
6Q97|1|4|G|332
6Q97|1|4|G|333
6Q97|1|4|A|334
6Q97|1|4|C|335
6Q97|1|4|G|336
*
6Q97|1|4|C|352
6Q97|1|4|C|353
6Q97|1|4|A|354
Current chains
- Chain 4
- transfer-messenger RNA (tmRNA)
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 5
- SsrA-binding protein
- Chain 7
- Transfer RNA; tRNA
- Chain I
- 50S ribosomal protein L11
Coloring options: