J3_6Q97_042
3D structure
- PDB id
- 6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGUAGCUCAGUUGGUUAGAGCAC*GGGGUCAC*GUCG
- Length
- 35 nucleotides
- Bulged bases
- 6Q97|1|8|U|16, 6Q97|1|8|U|17, 6Q97|1|8|G|18, 6Q97|1|8|U|21, 6Q97|1|8|U|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q97|1|8|C|6
6Q97|1|8|G|7
6Q97|1|8|U|8
6Q97|1|8|A|9
6Q97|1|8|G|10
6Q97|1|8|C|11
6Q97|1|8|U|12
6Q97|1|8|C|13
6Q97|1|8|A|14
6Q97|1|8|G|15
6Q97|1|8|U|16
6Q97|1|8|U|17
6Q97|1|8|G|18
6Q97|1|8|G|19
6Q97|1|8|U|20
6Q97|1|8|U|21
6Q97|1|8|A|22
6Q97|1|8|G|23
6Q97|1|8|A|24
6Q97|1|8|G|25
6Q97|1|8|C|26
6Q97|1|8|A|27
6Q97|1|8|C|28
*
6Q97|1|8|G|44
6Q97|1|8|G|45
6Q97|1|8|G|46
6Q97|1|8|G|47
6Q97|1|8|U|48
6Q97|1|8|C|49
6Q97|1|8|A|50
6Q97|1|8|C|51
*
6Q97|1|8|G|65
6Q97|1|8|U|66
6Q97|1|8|C|67
6Q97|1|8|G|68
Current chains
- Chain 8
- tRNA-Met
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain c
- 50S ribosomal protein L33
- Chain l
- 30S ribosomal protein S7
Coloring options: