J3_6Q97_043

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAC*GAUAAGC*GAUUUC

Length

16 nucleotides

Bulged bases

6Q97|1|1|U|72, 6Q97|1|1|A|74, 6Q97|1|1|U|113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|1|G|55
6Q97|1|1|A|56
6Q97|1|1|C|57
*
6Q97|1|1|G|70
6Q97|1|1|A|71
6Q97|1|1|U|72
6Q97|1|1|A|73
6Q97|1|1|A|74
6Q97|1|1|G|75
6Q97|1|1|C|76
*
6Q97|1|1|G|110
6Q97|1|1|A|111
6Q97|1|1|U|112
6Q97|1|1|U|113
6Q97|1|1|U|114
6Q97|1|1|C|115

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23

Chain Y

50S ribosomal protein L29

Chain d

50S ribosomal protein L34