J3_6Q97_050

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAU*AGACUGCC*GGAGGAAGGUG

Length

22 nucleotides

Bulged bases

6Q97|1|2|U|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q97|1|2|U|1116
6Q97|1|2|A|1117
6Q97|1|2|U|1118
*
6Q97|1|2|A|1155
6Q97|1|2|G|1156
6Q97|1|2|A|1157
6Q97|1|2|C|1158
6Q97|1|2|U|1159
6Q97|1|2|G|1160
6Q97|1|2|C|1161
6Q97|1|2|C|1162
*
6Q97|1|2|G|1174
6Q97|1|2|G|1175
6Q97|1|2|A|1176
6Q97|1|2|G|1177
6Q97|1|2|G|1178
6Q97|1|2|A|1179
6Q97|1|2|A|1180
6Q97|1|2|G|1181
6Q97|1|2|G|1182
6Q97|1|2|U|1183
6Q97|1|2|G|1184

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain l

30S ribosomal protein S7

Chain n

30S ribosomal protein S9

Chain o

30S ribosomal protein S10

Chain s

30S ribosomal protein S14