J3_6Q98_002

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6Q98|1|1|U|686, 6Q98|1|1|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Q98_002 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.2135

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6Q98|1|1|U|683
6Q98|1|1|G|684
6Q98|1|1|A|685
6Q98|1|1|U|686
6Q98|1|1|C|687
6Q98|1|1|U|688
6Q98|1|1|A|689
*
6Q98|1|1|U|773
6Q98|1|1|G|774
6Q98|1|1|G|775
*
6Q98|1|1|C|791
6Q98|1|1|A|792
6Q98|1|1|A|793
6Q98|1|1|A|794

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain D

50S ribosomal protein L4

Chain d

50S ribosomal protein L34