J3_6Q98_006

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CAAG*CCCAAAC*GUGG

Length

15 nucleotides

Bulged bases

6Q98|1|1|A|1609, 6Q98|1|1|U|1621

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q98|1|1|C|1306
6Q98|1|1|A|1307
6Q98|1|1|A|1308
6Q98|1|1|G|1309
*
6Q98|1|1|C|1605
6Q98|1|1|C|1606
6Q98|1|1|C|1607
6Q98|1|1|A|1608
6Q98|1|1|A|1609
6Q98|1|1|A|1610
6Q98|1|1|C|1611
*
6Q98|1|1|G|1620
6Q98|1|1|U|1621
6Q98|1|1|G|1622
6Q98|1|1|G|1623

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L34