J3_6Q98_008
3D structure
- PDB id
- 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CUAAU*AGGUUAG*CAUAAG
- Length
- 18 nucleotides
- Bulged bases
- 6Q98|1|1|U|2334, 6Q98|1|1|A|2336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Q98_008 not in the Motif Atlas
- Homologous match to J3_5J7L_071
- Geometric discrepancy: 0.2359
- The information below is about J3_5J7L_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44961.1
- Basepair signature
- cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6Q98|1|1|C|2295
6Q98|1|1|U|2296
6Q98|1|1|A|2297
6Q98|1|1|A|2298
6Q98|1|1|U|2299
*
6Q98|1|1|A|2317
6Q98|1|1|G|2318
6Q98|1|1|G|2319
6Q98|1|1|U|2320
6Q98|1|1|U|2321
6Q98|1|1|A|2322
6Q98|1|1|G|2323
*
6Q98|1|1|C|2332
6Q98|1|1|A|2333
6Q98|1|1|U|2334
6Q98|1|1|A|2335
6Q98|1|1|A|2336
6Q98|1|1|G|2337
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain 4
- Transfer-messenger RNA; tmRNA
- Chain E
- 50S ribosomal protein L5
- Chain O
- 50S ribosomal protein L18
- Chain W
- 50S ribosomal protein L27
Coloring options: