J3_6Q98_016

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UGGUUUAAUUC*GAAGAACCUUAC*GGCUACACA

Length

32 nucleotides

Bulged bases

6Q98|1|2|A|975, 6Q98|1|2|G|976, 6Q98|1|2|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q98|1|2|U|952
6Q98|1|2|G|953
6Q98|1|2|G|954
6Q98|1|2|U|955
6Q98|1|2|U|956
6Q98|1|2|U|957
6Q98|1|2|A|958
6Q98|1|2|A|959
6Q98|1|2|U|960
6Q98|1|2|U|961
6Q98|1|2|C|962
*
6Q98|1|2|G|973
6Q98|1|2|A|974
6Q98|1|2|A|975
6Q98|1|2|G|976
6Q98|1|2|A|977
6Q98|1|2|A|978
6Q98|1|2|C|979
6Q98|1|2|C|980
6Q98|1|2|U|981
6Q98|1|2|U|982
6Q98|1|2|A|983
6Q98|1|2|C|984
*
6Q98|1|2|G|1221
6Q98|1|2|G|1222
6Q98|1|2|C|1223
6Q98|1|2|U|1224
6Q98|1|2|A|1225
6Q98|1|2|C|1226
6Q98|1|2|A|1227
6Q98|1|2|C|1228
6Q98|1|2|A|1229

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 4

Transfer-messenger RNA; tmRNA

Chain 5

SsrA-binding protein

Chain o

30S ribosomal protein S10

Chain r

30S ribosomal protein S13

Chain s

30S ribosomal protein S14

Chain x

30S ribosomal protein S19