J3_6Q98_017

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CUUGACAUCC*GAGACAG*CUUACG

Length

23 nucleotides

Bulged bases

6Q98|1|2|U|1212, 6Q98|1|2|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q98|1|2|C|990
6Q98|1|2|U|991
6Q98|1|2|U|992
6Q98|1|2|G|993
6Q98|1|2|A|994
6Q98|1|2|C|995
6Q98|1|2|A|996
6Q98|1|2|U|997
6Q98|1|2|C|998
6Q98|1|2|C|999
*
6Q98|1|2|G|1041
6Q98|1|2|A|1042
6Q98|1|2|G|1043
6Q98|1|2|A|1044
6Q98|1|2|C|1045
6Q98|1|2|A|1046
6Q98|1|2|G|1047
*
6Q98|1|2|C|1210
6Q98|1|2|U|1211
6Q98|1|2|U|1212
6Q98|1|2|A|1213
6Q98|1|2|C|1214
6Q98|1|2|G|1215

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain s

30S ribosomal protein S14