J3_6Q98_025
3D structure
- PDB id
- 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GUCGACCCCUAAGGC*GUCGAUGGGAAAC*GUAC
- Length
- 32 nucleotides
- Bulged bases
- 6Q98|1|1|C|1350, 6Q98|1|1|U|1379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q98|1|1|G|1343
6Q98|1|1|U|1344
6Q98|1|1|C|1345
6Q98|1|1|G|1346
6Q98|1|1|A|1347
6Q98|1|1|C|1348
6Q98|1|1|C|1349
6Q98|1|1|C|1350
6Q98|1|1|C|1351
6Q98|1|1|U|1352
6Q98|1|1|A|1353
6Q98|1|1|A|1354
6Q98|1|1|G|1355
6Q98|1|1|G|1356
6Q98|1|1|C|1357
*
6Q98|1|1|G|1374
6Q98|1|1|U|1375
6Q98|1|1|C|1376
6Q98|1|1|G|1377
6Q98|1|1|A|1378
6Q98|1|1|U|1379
6Q98|1|1|G|1380
6Q98|1|1|G|1381
6Q98|1|1|G|1382
6Q98|1|1|A|1383
6Q98|1|1|A|1384
6Q98|1|1|A|1385
6Q98|1|1|C|1386
*
6Q98|1|1|G|1401
6Q98|1|1|U|1402
6Q98|1|1|A|1403
6Q98|1|1|C|1404
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L2
- Chain T
- 50S ribosomal protein L23
- Chain d
- 50S ribosomal protein L34
Coloring options: