J3_6Q98_026

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGGGACGGA*UUCC*GAAAAGCC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q98|1|1|G|1423
6Q98|1|1|G|1424
6Q98|1|1|G|1425
6Q98|1|1|G|1426
6Q98|1|1|A|1427
6Q98|1|1|C|1428
6Q98|1|1|G|1429
6Q98|1|1|G|1430
6Q98|1|1|A|1431
*
6Q98|1|1|U|1562
6Q98|1|1|U|1563
6Q98|1|1|C|1564
6Q98|1|1|C|1565
*
6Q98|1|1|G|1568
6Q98|1|1|A|1569
6Q98|1|1|A|1570
6Q98|1|1|A|1571
6Q98|1|1|A|1572
6Q98|1|1|G|1573
6Q98|1|1|C|1574
6Q98|1|1|C|1575

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2