3D structure

PDB id
6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
4.3 Å

Loop

Sequence
GAAC*GUUGAUAG*CUAAUGAAC
Length
21 nucleotides
Bulged bases
6Q98|1|1|U|2833, 6Q98|1|1|U|2884, 6Q98|1|1|G|2885
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6Q98|1|1|G|2812
6Q98|1|1|A|2813
6Q98|1|1|A|2814
6Q98|1|1|C|2815
*
6Q98|1|1|G|2831
6Q98|1|1|U|2832
6Q98|1|1|U|2833
6Q98|1|1|G|2834
6Q98|1|1|A|2835
6Q98|1|1|U|2836
6Q98|1|1|A|2837
6Q98|1|1|G|2838
*
6Q98|1|1|C|2880
6Q98|1|1|U|2881
6Q98|1|1|A|2882
6Q98|1|1|A|2883
6Q98|1|1|U|2884
6Q98|1|1|G|2885
6Q98|1|1|A|2886
6Q98|1|1|A|2887
6Q98|1|1|C|2888

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L3
Chain N
50S ribosomal protein L17
Chain S
50S ribosomal protein L22
Chain b
50S ribosomal protein L32

Coloring options:

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