J3_6Q98_034
3D structure
- PDB id
- 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- UGAUUCUGGAUUCGACG*CGGACG*CCA
- Length
- 26 nucleotides
- Bulged bases
- 6Q98|1|4|U|10, 6Q98|1|4|U|12, 6Q98|1|4|G|13, 6Q98|1|4|G|14, 6Q98|1|4|U|16, 6Q98|1|4|U|17, 6Q98|1|4|C|18, 6Q98|1|4|G|19, 6Q98|1|4|A|20, 6Q98|1|4|C|21, 6Q98|1|4|G|332, 6Q98|1|4|C|335
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q98|1|4|U|6
6Q98|1|4|G|7
6Q98|1|4|A|8
6Q98|1|4|U|9
6Q98|1|4|U|10
6Q98|1|4|C|11
6Q98|1|4|U|12
6Q98|1|4|G|13
6Q98|1|4|G|14
6Q98|1|4|A|15
6Q98|1|4|U|16
6Q98|1|4|U|17
6Q98|1|4|C|18
6Q98|1|4|G|19
6Q98|1|4|A|20
6Q98|1|4|C|21
6Q98|1|4|G|22
*
6Q98|1|4|C|331
6Q98|1|4|G|332
6Q98|1|4|G|333
6Q98|1|4|A|334
6Q98|1|4|C|335
6Q98|1|4|G|336
*
6Q98|1|4|C|352
6Q98|1|4|C|353
6Q98|1|4|A|354
Current chains
- Chain 4
- transfer-messenger RNA (tmRNA)
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 5
- SsrA-binding protein
- Chain E
- 50S ribosomal protein L5
- Chain M
- 50S ribosomal protein L16
Coloring options: