3D structure

PDB id
6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
4.3 Å

Loop

Sequence
UGAUUCUGGAUUCGACG*CGGACG*CCA
Length
26 nucleotides
Bulged bases
6Q98|1|4|U|10, 6Q98|1|4|U|12, 6Q98|1|4|G|13, 6Q98|1|4|G|14, 6Q98|1|4|U|16, 6Q98|1|4|U|17, 6Q98|1|4|C|18, 6Q98|1|4|G|19, 6Q98|1|4|A|20, 6Q98|1|4|C|21, 6Q98|1|4|G|332, 6Q98|1|4|C|335
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6Q98|1|4|U|6
6Q98|1|4|G|7
6Q98|1|4|A|8
6Q98|1|4|U|9
6Q98|1|4|U|10
6Q98|1|4|C|11
6Q98|1|4|U|12
6Q98|1|4|G|13
6Q98|1|4|G|14
6Q98|1|4|A|15
6Q98|1|4|U|16
6Q98|1|4|U|17
6Q98|1|4|C|18
6Q98|1|4|G|19
6Q98|1|4|A|20
6Q98|1|4|C|21
6Q98|1|4|G|22
*
6Q98|1|4|C|331
6Q98|1|4|G|332
6Q98|1|4|G|333
6Q98|1|4|A|334
6Q98|1|4|C|335
6Q98|1|4|G|336
*
6Q98|1|4|C|352
6Q98|1|4|C|353
6Q98|1|4|A|354

Current chains

Chain 4
transfer-messenger RNA (tmRNA)

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain 5
SsrA-binding protein
Chain E
50S ribosomal protein L5
Chain M
50S ribosomal protein L16

Coloring options:

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