J3_6Q98_035
3D structure
- PDB id
- 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GUGGAUGC*GCGAAAAGAAC*GAGUGAAAAAGAACCUGAAAC
- Length
- 40 nucleotides
- Bulged bases
- 6Q98|1|1|A|504, 6Q98|1|1|A|508, 6Q98|1|1|U|511
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q98|1|1|G|24
6Q98|1|1|U|25
6Q98|1|1|G|26
6Q98|1|1|G|27
6Q98|1|1|A|28
6Q98|1|1|U|29
6Q98|1|1|G|30
6Q98|1|1|C|31
*
6Q98|1|1|G|474
6Q98|1|1|C|475
6Q98|1|1|G|476
6Q98|1|1|A|477
6Q98|1|1|A|478
6Q98|1|1|A|479
6Q98|1|1|A|480
6Q98|1|1|G|481
6Q98|1|1|A|482
6Q98|1|1|A|483
6Q98|1|1|C|484
*
6Q98|1|1|G|496
6Q98|1|1|A|497
6Q98|1|1|G|498
6Q98|1|1|U|499
6Q98|1|1|G|500
6Q98|1|1|A|501
6Q98|1|1|A|502
6Q98|1|1|A|503
6Q98|1|1|A|504
6Q98|1|1|A|505
6Q98|1|1|G|506
6Q98|1|1|A|507
6Q98|1|1|A|508
6Q98|1|1|C|509
6Q98|1|1|C|510
6Q98|1|1|U|511
6Q98|1|1|G|512
6Q98|1|1|A|513
6Q98|1|1|A|514
6Q98|1|1|A|515
6Q98|1|1|C|516
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 6
- Nascent peptide
- Chain Q
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L22
- Chain U
- 50S ribosomal protein L24
- Chain b
- 50S ribosomal protein L32
Coloring options: