J3_6Q9A_025

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

6Q9A|1|2|U|1240, 6Q9A|1|2|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Q9A_025 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1702

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

6Q9A|1|2|C|1237
6Q9A|1|2|A|1238
6Q9A|1|2|A|1239
6Q9A|1|2|U|1240
6Q9A|1|2|G|1241
*
6Q9A|1|2|C|1296
6Q9A|1|2|G|1297
6Q9A|1|2|U|1298
6Q9A|1|2|A|1299
6Q9A|1|2|G|1300
6Q9A|1|2|U|1301
6Q9A|1|2|C|1302
6Q9A|1|2|C|1303
*
6Q9A|1|2|G|1334
6Q9A|1|2|U|1335
6Q9A|1|2|C|1336
6Q9A|1|2|G|1337

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S7

Chain r

30S ribosomal protein S13